Genome Browser


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SNP Information

dbSNP ID  rs4986950
JSNP ID  -
Chromosome  6
Chromosome Position  26200925
Strand  +
Allele  C/T
Validation Class  SNP: single nucleotide polymorphism
SNP Effect  POLYPHEN  SIFT

Gene Information

Type mRNA Accession Gene Strand mRNA_Pos Codon_Pos Protein_Pos Allele Codons AminoAcid
 CDS-nonsynonymous  NM_000410  HFE  +  810  2  217  C/T  ACC/ATC  T/I
 Intron  NM_139003  HFE  +  -  -  -  C/T    -
 Intron  NM_139002  HFE  +  -  -  -  C/T    -
 CDS-nonsynonymous  NM_139005  HFE  +  810  2  217  C/T  ACC/ATC  T/I
 Intron  NM_139006  HFE  +  -  -  -  C/T    -
 CDS-nonsynonymous  NM_139007  HFE  +  546  2  129  C/T  ACC/ATC  T/I
 Intron  NM_139008  HFE  +  -  -  -  C/T    -
 CDS-nonsynonymous  NM_139009  HFE  +  741  2  194  C/T  ACC/ATC  T/I
 CDS-nonsynonymous  NM_139004  HFE  +  534  2  125  C/T  ACC/ATC  T/I
 CDS-nonsynonymous  NM_139010  HFE  +  270  2  37  C/T  ACC/ATC  T/I
 Intron  NM_139011  HFE  +  -  -  -  C/T    -

Disease Information

Disease Hit  0
Disease Name  -
Others  -

Disease Information

dbSNP JSNP ALFRED
 
TC
0.0020.997
  
   -   -

Flanking Sequence

dbSNP
>gnl|dbSNP|rs4986950 rs=4986950|pos=211|len=470|taxid=9606|mol=genomic|class=1|alleles=C/T|build=126
CAAGTGACACTGTGTTAGAGTCCAATCTTAGGACACAAAATGGTGTCTCT
CCTGTAGCTTGTTTTTTTCTGAAAAGGGTATTTCCTTCCTCCAACCTATA
GAAGGAAGTGAAAGTTCCAGTCTTCCTGGSAAGGGTAAACAGATCCCCTC
TCCTCATCCTTCCTCTTTCCTGTCAAGTGCCTCCTTTGGTGAAGGTGACA
CATCATGTGA
Y
CTCTTCAGTGACCACTCTACGGTGTCGGGCCTTGAACTACTACCCCCAGA
ACATCACCATGAAGTGGCTGAAGGATAAGCAGCCAATGGATGCCAAGGAG
TTCGAACCTAAAGACGTATTGCCCAATGGGGATGGGACCTACCAGGGCTG
GATAACCTTGGCTGTACCCCCTGGGGAAGAGCAGAGATATACGTRCCAGG
TGGAGCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTATGTGA
CTGATGAGA 
JSNP
>gnl|dbSNP|rs4986950 rs=4986950|pos=211|len=470|taxid=9606|mol=genomic|class=1|alleles=C/T|build=126
CAAGTGACACTGTGTTAGAGTCCAATCTTAGGACACAAAATGGTGTCTCT
CCTGTAGCTTGTTTTTTTCTGAAAAGGGTATTTCCTTCCTCCAACCTATA
GAAGGAAGTGAAAGTTCCAGTCTTCCTGGSAAGGGTAAACAGATCCCCTC
TCCTCATCCTTCCTCTTTCCTGTCAAGTGCCTCCTTTGGTGAAGGTGACA
CATCATGTGA
Y
CTCTTCAGTGACCACTCTACGGTGTCGGGCCTTGAACTACTACCCCCAGA
ACATCACCATGAAGTGGCTGAAGGATAAGCAGCCAATGGATGCCAAGGAG
TTCGAACCTAAAGACGTATTGCCCAATGGGGATGGGACCTACCAGGGCTG
GATAACCTTGGCTGTACCCCCTGGGGAAGAGCAGAGATATACGTRCCAGG
TGGAGCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTATGTGA
CTGATGAGA 

Selected Disease


kobic