Genome Browser


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SNP Information

dbSNP ID  rs1800562
JSNP ID  -
Chromosome  6
Chromosome Position  26201120
Strand  +
Allele  A/G
Validation Class  SNP: single nucleotide polymorphism
SNP Effect  POLYPHEN  SIFT

Gene Information

Type mRNA Accession Gene Strand mRNA_Pos Codon_Pos Protein_Pos Allele Codons AminoAcid
 CDS-nonsynonymous  NM_000410  HFE  +  1005  2  282  A/G  TAC/TGC  Y/C
 CDS-nonsynonymous  NM_139003  HFE  +  687  2  176  A/G  TAC/TGC  Y/C
 Intron  NM_139002  HFE  +  -  -  -  A/G    -
 Intron  NM_139005  HFE  +  -  -  -  A/G    -
 CDS-nonsynonymous  NM_139006  HFE  +  963  2  268  A/G  TAC/TGC  Y/C
 CDS-nonsynonymous  NM_139007  HFE  +  741  2  194  A/G  TAC/TGC  Y/C
 CDS-nonsynonymous  NM_139008  HFE  +  699  2  180  A/G  TAC/TGC  Y/C
 CDS-nonsynonymous  NM_139009  HFE  +  936  2  259  A/G  TAC/TGC  Y/C
 CDS-nonsynonymous  NM_139004  HFE  +  729  2  190  A/G  TAC/TGC  Y/C
 CDS-nonsynonymous  NM_139010  HFE  +  465  2  102  A/G  TAC/TGC  Y/C
 Intron  NM_139011  HFE  +  -  -  -  A/G    -

Disease Information

Disease Hit  1
Disease Name  Hemochromatosis
Others  -

Disease Information

dbSNP JSNP ALFRED
 
GA
0.9780.021
  
   -   -

Flanking Sequence

dbSNP
>gnl|dbSNP|rs1800562 rs=1800562|pos=202|len=450|taxid=9606|mol=genomic|class=1|alleles=A/G|build=126
ATGTGAYCTCTTCAGTGACCACTCTACGGTGTCGGGCCTTGAACTACTAC
CCCCAGAACATCACCATGAAGTGGCTGAAGGATAAGCAGCCAATGGATGC
CAAGGAGTTCGAACCTAAAGACGTATTGCCCAATGGGGATGGGACCTACC
AGGGCTGGATAACCTTGGCTGTACCCCCTGGGGAAGAGCAGAGATATACG
T
R
CCAGGTGGAGCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA
TGTGACTGATGAGAGCCAGGAGCTGAGAAAATCTATTGGGGGTTRAGAGG
AGTGCCTGAGGAGGTAATTATGGCAGTGAGATGAGGATCTGCTCTTTGTT
AGGGGGTGGGCTGAGGGTGGCAATCAAAGGCTTTAACTTGCTTTTTCTGT
TTTAGAGCCCTCACCGTCTGGCACCCTAGTCATTGGAGTCATCAGTGG 
JSNP
>gnl|dbSNP|rs1800562 rs=1800562|pos=202|len=450|taxid=9606|mol=genomic|class=1|alleles=A/G|build=126
ATGTGAYCTCTTCAGTGACCACTCTACGGTGTCGGGCCTTGAACTACTAC
CCCCAGAACATCACCATGAAGTGGCTGAAGGATAAGCAGCCAATGGATGC
CAAGGAGTTCGAACCTAAAGACGTATTGCCCAATGGGGATGGGACCTACC
AGGGCTGGATAACCTTGGCTGTACCCCCTGGGGAAGAGCAGAGATATACG
T
R
CCAGGTGGAGCACCCAGGCCTGGATCAGCCCCTCATTGTGATCTGGGGTA
TGTGACTGATGAGAGCCAGGAGCTGAGAAAATCTATTGGGGGTTRAGAGG
AGTGCCTGAGGAGGTAATTATGGCAGTGAGATGAGGATCTGCTCTTTGTT
AGGGGGTGGGCTGAGGGTGGCAATCAAAGGCTTTAACTTGCTTTTTCTGT
TTTAGAGCCCTCACCGTCTGGCACCCTAGTCATTGGAGTCATCAGTGG 

Selected Disease


kobic